selected publications
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academic article
- Utilizing cost-effective portable equipment to enhance COVID-19 variant tracking both on-site and at a large scale.. Journal of clinical microbiology. 62:-. 2024
- Portable Nanopore sequencing solution for next-generation HIV drug resistance testing.. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology. -. 2024
- Precision detection of recent HIV infections using high-throughput genomic incidence assay.. Microbiology spectrum. 11:-. 2023
- Immune cell identifier and classifier (ImmunIC) for single cell transcriptomic readouts.. Scientific reports. 13:-. 2023
- Full-spectrum HIV drug resistance mutation detection by high-resolution complete pol gene sequencing.. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology. -. 2023
- Gut microbiome in people living with HIV is associated with impaired thiamine and folate syntheses.. Microbial pathogenesis. -. 2021
- Microdrop Human Immunodeficiency Virus Sequencing for Incidence and Drug Resistance Surveillance.. The Journal of infectious diseases. 224:1048-1059. 2021
- High-precision and cost-efficient sequencing for real-time COVID-19 surveillance.. Scientific reports. 11:-. 2021
- Genomic investigation of the coronavirus disease-2019 outbreak in the Republic of Korea.. Scientific reports. 11:-. 2021
- CCMP: Software-as-a-service approach for fully-automated microbiome profiling.. Journal of biomedical informatics. -. 2019
- Daily HIV pre-exposure prophylaxis (PrEP) with tenofovir disoproxil fumarate-emtricitabine reduced Streptococcus and increased Erysipelotrichaceae in rectal microbiota.. Scientific reports. 8:-. 2018
- The HIV Genomic Incidence Assay Meets False Recency Rate and Mean Duration of Recency Infection Performance Standards.. Scientific reports. 7:-. 2017
- Enhancement of viral escape in HIV-1 Nef by STEP vaccination.. AIDS (London, England). 30:2449-2458. 2016
- Molecular clock of HIV-1 envelope genes under early immune selection.. Retrovirology. 13:-. 2016
- SPMM: estimating infection duration of multivariant HIV-1 infections.. Bioinformatics (Oxford, England). 32:1308-15. 2015
- Developing high-throughput HIV incidence assay with pyrosequencing platform.. Journal of virology. 88:2977-90. 2013