academic article

• Utilizing cost-effective portable equipment to enhance COVID-19 variant tracking both on-site and at a large scale..  Journal of clinical microbiology.  62:-. 2024
• Portable Nanopore sequencing solution for next-generation HIV drug resistance testing..  Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.  -. 2024
• Precision detection of recent HIV infections using high-throughput genomic incidence assay..  Microbiology spectrum.  11:-. 2023
• Immune cell identifier and classifier (ImmunIC) for single cell transcriptomic readouts..  Scientific reports.  13:-. 2023
• Full-spectrum HIV drug resistance mutation detection by high-resolution complete pol gene sequencing..  Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.  -. 2023
• Gut microbiome in people living with HIV is associated with impaired thiamine and folate syntheses..  Microbial pathogenesis.  -. 2021
• Microdrop Human Immunodeficiency Virus Sequencing for Incidence and Drug Resistance Surveillance..  The Journal of infectious diseases.  224:1048-1059. 2021
• High-precision and cost-efficient sequencing for real-time COVID-19 surveillance..  Scientific reports.  11:-. 2021
• Genomic investigation of the coronavirus disease-2019 outbreak in the Republic of Korea..  Scientific reports.  11:-. 2021
• CCMP: Software-as-a-service approach for fully-automated microbiome profiling..  Journal of biomedical informatics.  -. 2019
• Daily HIV pre-exposure prophylaxis (PrEP) with tenofovir disoproxil fumarate-emtricitabine reduced Streptococcus and increased Erysipelotrichaceae in rectal microbiota..  Scientific reports.  8:-. 2018
• The HIV Genomic Incidence Assay Meets False Recency Rate and Mean Duration of Recency Infection Performance Standards..  Scientific reports.  7:-. 2017
• Enhancement of viral escape in HIV-1 Nef by STEP vaccination..  AIDS (London, England).  30:2449-2458. 2016
• Molecular clock of HIV-1 envelope genes under early immune selection..  Retrovirology.  13:-. 2016
• SPMM: estimating infection duration of multivariant HIV-1 infections..  Bioinformatics (Oxford, England).  32:1308-15. 2015
• Developing high-throughput HIV incidence assay with pyrosequencing platform..  Journal of virology.  88:2977-90. 2013